miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Populus trichocarpa



ABOUT THIS RECORD

ID: MNEST052221
species: Populus trichocarpa
source: PMRD, original name: ptc-miRf10399-akr

Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
AGACCCAAGAGCGTTGGGTCTGGC

miRNA*
GCAGACCCAGTTCTCTTGGGTCTTG

mismatches: 2
bulges: 1

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pre-miRNA
GGAGTGGCAGGAGCGCAGACCCAGTTCTCTTGGGTCTTGCAGCCCCACTTGGCCCAATACACTAGGAGCAGGCGTCTAAACCCAAGCTTAGGTTTGCCTG
CAGTGCTAGACCCAAGAGCGTTGGGTCTGGCTGCAACTTC


dot-bracket secondary structure
(((((.(((...((.(((((((((..(((((((((((.((((((......)))..............(((((((....((((........))))))))))
)..))).)))))))))))..)))))))))))))).)))))



SIMILARITIES
miRBase no hits

PMRD ptc-miRf12069-akr: 0.0000000005

microPC no hits
UniProt no hits

RFAM MIR474: 5e-41

MORE

miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
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